home/categories/computational-chemistry/tiangzlab-omicsclaw-skills-singlecell-scrna-sc-doublet-detection-skill-md
computational-chemistryresearch
sc-doublet-detection
Annotate putative doublets in single-cell RNA-seq data using Scrublet, DoubletDetection, DoubletFinder, scDblFinder, or scds. The wrapper preserves the current AnnData matrix semantics, standardizes output columns in `obs`, and exports a reusable figure/table gallery.
maintainer
TianGzlab
Updated 4/6/2026
Stars
115
Forks
23
quick start
Installation and usage
Annotate putative doublets in single-cell RNA-seq data using Scrublet, DoubletDetection, DoubletFinder, scDblFinder, or scds. The wrapper preserves the current AnnData matrix semantics, standardizes output columns in `obs`, and exports a reusable figure/table gallery.
Installation
$ install --globalskills.sh
Usage
Once installed, you can use this skill by running the following command in your terminal:
skills use sc-doublet-detection