home/categories/scientific-computing/mdbabumiamssm-llms-universal-life-science-and-clinical-skills-skills-workflow-management-workflows-metabolomics-pipeline-skill-md
scientific-computingresearch
bio-workflows-metabolomics-pipeline
End-to-end metabolomics workflow from raw MS data to pathway analysis. Orchestrates XCMS preprocessing, annotation, normalization, statistical analysis, and pathway mapping. Use when processing LC-MS metabolomics data.
maintainer
mdbabumiamssm
Updated 2/4/2026
Stars
24
Forks
4
quick start
Installation and usage
End-to-end metabolomics workflow from raw MS data to pathway analysis. Orchestrates XCMS preprocessing, annotation, normalization, statistical analysis, and pathway mapping. Use when processing LC-MS metabolomics data.
Installation
$ install --globalskills.sh
Usage
Once installed, you can use this skill by running the following command in your terminal:
skills use bio-workflows-metabolomics-pipeline