home/categories/scientific-computing/mdbabumiamssm-llms-universal-life-science-and-clinical-skills-skills-spatial-omics-spatial-de-skill-md
scientific-computingresearch
spatial-de
Differential expression analysis — find marker genes for clusters or compare two groups. Supports Wilcoxon rank-sum, t-test, and PyDESeq2 methods with publication-ready figures and CSV tables.
maintainer
mdbabumiamssm
Updated 3/31/2026
Stars
24
Forks
4
quick start
Installation and usage
Differential expression analysis — find marker genes for clusters or compare two groups. Supports Wilcoxon rank-sum, t-test, and PyDESeq2 methods with publication-ready figures and CSV tables.
Installation
$ install --globalskills.sh
Usage
Once installed, you can use this skill by running the following command in your terminal:
skills use spatial-de