scikit-bio

Name: scikit-bio
Author: lamm-mit

Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.

View Source bioinformatics

maintainer

lamm-mit

Updated 3/14/2026

Stars

156

Forks

quick start

Installation and usage

Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick I/O, for microbiome analysis.

Installation

$ install --globalskills.sh

Usage

Once installed, you can use this skill by running the following command in your terminal:

skills use scikit-bio