home/categories/scientific-computing/gptomics-bioskills-workflows-genome-annotation-pipeline-skill-md
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bio-workflows-genome-annotation-pipeline
End-to-end genome annotation pipeline from assembled contigs to functional annotation, covering repeat masking, gene prediction, and functional assignment for both prokaryotic and eukaryotic genomes. Use when annotating a newly assembled genome from scratch.
maintainer
GPTomics
Updated 2/13/2026
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471
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quick start
Installation and usage
End-to-end genome annotation pipeline from assembled contigs to functional annotation, covering repeat masking, gene prediction, and functional assignment for both prokaryotic and eukaryotic genomes. Use when annotating a newly assembled genome from scratch.
Installation
$ install --globalskills.sh
Usage
Once installed, you can use this skill by running the following command in your terminal:
skills use bio-workflows-genome-annotation-pipeline