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bio-workflows-expression-to-pathways

Workflow from differential expression results to functional enrichment analysis. Covers GO, KEGG, Reactome enrichment with clusterProfiler and visualization. Use when taking DE results to pathway enrichment.

View Sourcebioinformatics
GPTomics
maintainer
GPTomics
Updated 4/6/2026
Stars
471
Forks
81
quick start

Installation and usage

Workflow from differential expression results to functional enrichment analysis. Covers GO, KEGG, Reactome enrichment with clusterProfiler and visualization. Use when taking DE results to pathway enrichment.

Installation
$ install --globalskills.sh
Usage

Once installed, you can use this skill by running the following command in your terminal:

skills use bio-workflows-expression-to-pathways