home/categories/bioinformatics/gptomics-bioskills-epidemiological-genomics-transmission-inference-skill-md
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bio-epidemiological-genomics-transmission-inference
Infer pathogen transmission networks and identify likely transmission pairs using TransPhylo and outbreak reconstruction algorithms. Estimate who-infected-whom from genomic and epidemiological data. Use when investigating outbreak transmission chains or identifying superspreaders.
maintainer
GPTomics
Updated 2/13/2026
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471
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81
quick start
Installation and usage
Infer pathogen transmission networks and identify likely transmission pairs using TransPhylo and outbreak reconstruction algorithms. Estimate who-infected-whom from genomic and epidemiological data. Use when investigating outbreak transmission chains or identifying superspreaders.
Installation
$ install --globalskills.sh
Usage
Once installed, you can use this skill by running the following command in your terminal:
skills use bio-epidemiological-genomics-transmission-inference