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spatial-transcriptomics-tutorials-with-omicverse
Guide users through omicverse's spatial transcriptomics tutorials covering preprocessing, deconvolution, and downstream modelling workflows across Visium, Visium HD, Stereo-seq, and Slide-seq datasets.
maintainer
FreedomIntelligence
Updated 3/8/2026
Stars
1987
Forks
270
quick start
Installation and usage
Guide users through omicverse's spatial transcriptomics tutorials covering preprocessing, deconvolution, and downstream modelling workflows across Visium, Visium HD, Stereo-seq, and Slide-seq datasets.
Installation
$ install --globalskills.sh
Usage
Once installed, you can use this skill by running the following command in your terminal:
skills use spatial-transcriptomics-tutorials-with-omicverse