home/categories/bioinformatics/freedomintelligence-openclaw-medical-skills-skills-fastq-analysis-skill-md
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fastq-analysis-pipeline
Guide through omicverse's alignment module for SRA downloading, FASTQ quality control, STAR alignment, gene quantification, and single-cell kallisto/bustools pipelines covering both bulk and single-cell RNA-seq workflows.
maintainer
FreedomIntelligence
Updated 3/8/2026
Stars
1987
Forks
270
quick start
Installation and usage
Guide through omicverse's alignment module for SRA downloading, FASTQ quality control, STAR alignment, gene quantification, and single-cell kallisto/bustools pipelines covering both bulk and single-cell RNA-seq workflows.
Installation
$ install --globalskills.sh
Usage
Once installed, you can use this skill by running the following command in your terminal:
skills use fastq-analysis-pipeline