home/categories/scientific-computing/davila7-claude-code-templates-cli-tool-components-skills-scientific-scanpy-skill-md
scientific-computingresearch
scanpy
Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.
maintainer
davila7
Updated 1/20/2026
Stars
17577
Forks
1576
quick start
Installation and usage
Single-cell RNA-seq analysis. Load .h5ad/10X data, QC, normalization, PCA/UMAP/t-SNE, Leiden clustering, marker genes, cell type annotation, trajectory, for scRNA-seq analysis.
Installation
$ install --globalskills.sh
Usage
Once installed, you can use this skill by running the following command in your terminal:
skills use scanpy