computational-chemistry
946
dyn-object-masks
Generate dynamic-object binary masks after global motion compensation, output CSR sparse format.
benchflow-ai
research
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lab-tools
946
segment-combiner
Combine multiple segment detection results into a unified list. Use when you need to merge segments from different detectors, prepare removal lists for video processing, or consolidate detection outputs.
benchflow-ai
research
lab-tools
946
sampling-and-indexing
Standardize video sampling and frame indexing so interval instructions and mask frames stay aligned with a valid key/index scheme.
benchflow-ai
research
lab-tools
946
glm-calibration
Calibrate GLM parameters for water temperature simulation. Use when you need to adjust model parameters to minimize RMSE between simulated and observed temperatures.
benchflow-ai
research
lab-tools
946
pause-detector
Detect pauses and silence in audio using local dynamic thresholds. Use when you need to find natural pauses in lectures, board-writing silences, or breaks between sections. Uses local context comparison to avoid false positives from volume variation.
benchflow-ai
research
scientific-computing
946
csv-processing
Use this skill when reading sensor data from CSV files, writing simulation results to CSV, processing time-series data with pandas, or handling missing values in datasets.
benchflow-ai
research
code-quality
946
output-validation
Local self-check of instructions and mask outputs (format/range/consistency) without using GT.
benchflow-ai
testing-security
code-quality
946
manufacturing-failure-reason-codebook-normalization
This skill should be considered when you need to normalize testing engineers' written defect reasons following the provided product codebooks. This skill will correct the typos, misused abbreviations, ambiguous descriptions, mixed Chinese-English text or misleading text and provide explanations. This skill will do segmentation, semantic matching, confidence calibration and station validation.
benchflow-ai
testing-security
code-quality
946
python-scala-functional
Guide for translating Python code to functional Scala style. Use when converting Python code involving higher-order functions, decorators, closures, generators, or when aiming for idiomatic functional Scala with pattern matching, Option handling, and monadic operations.
benchflow-ai
testing-security
security
946
jackson-security
Security considerations for Jackson JSON deserialization in Java applications. Covers timing of validation, raw input interception, and common deserialization attack patterns.
benchflow-ai
testing-security
security
946
spring-security-6
Migrate Spring Security 5 to Spring Security 6 configuration. Use when removing WebSecurityConfigurerAdapter, replacing @EnableGlobalMethodSecurity with @EnableMethodSecurity, converting antMatchers to requestMatchers, or updating to lambda DSL configuration style. Covers SecurityFilterChain beans and authentication manager changes.
benchflow-ai
testing-security
testing
946
pytest-asyncio-httpx-mocking
When masking httpx.AsyncClient with unittest.mock in Pytest, AsyncMock must be used instead of MagicMock for async methods like post/get to prevent TypeError when awaited.
Project-N-E-K-O
testing-security
automation-tools
946
syzkaller-build-loop
Full build workflow for adding new syscall descriptions to syzkaller
benchflow-ai
tools
frontend
945
gea-ui-components
Guide for using @geajs/ui — a Tailwind-styled, Zag.js-powered component library for the Gea framework. Use when building UIs with @geajs/ui components like Button, Select, Dialog, Tabs, Toast, or any pre-built component from the library.
dashersw
development
bioinformatics
943
bulktrajblend-trajectory-interpolation
Extend scRNA-seq developmental trajectories with BulkTrajBlend by generating intermediate cells from bulk RNA-seq, training beta-VAE and GNN models, and interpolating missing states.
Starlitnightly
research
scientific-computing
943
single-cell-multi-omics-integration
Multi-omics integration: MOFA factor analysis, GLUE unpaired alignment, SIMBA batch correction, TOSICA label transfer, StaVIA trajectory. Covers scRNA+scATAC paired/unpaired workflows.
Starlitnightly
research
scientific-computing
943
bulk-rna-seq-deconvolution-with-bulk2single
Turn bulk RNA-seq cohorts into synthetic single-cell datasets using omicverse's Bulk2Single workflow for cell fraction estimation, beta-VAE generation, and quality control comparisons against reference scRNA-seq.
Starlitnightly
research
scientific-computing
943
single-cell-clustering-and-batch-correction-with-omicverse
Single-cell clustering (Leiden, Louvain, scICE, GMM), batch correction (Harmony, scVI, BBKNN, Combat), topic modeling, and cNMF in OmicVerse.
Starlitnightly
research
bioinformatics
943
single2spatial-spatial-mapping
Map scRNA-seq atlases onto spatial transcriptomics slides using omicverse's Single2Spatial workflow for deep-forest training, spot-level assessment, and marker visualisation.
Starlitnightly
research